`denoise`¶

Module: `denoise.adaptive_soft_matching`¶

adaptive_soft_matching(ima, fimau, fimao, sigma)

Adaptive Soft Coefficient Matching

Module: `denoise.bias_correction`¶

Bias field correction for diffusion MRI data.

Provides classical regression-based bias field correction via Legendre polynomial regression and cubic B-spline regression.

The bias field is estimated exclusively from the mean b0 volume in the log domain and applied uniformly to all DWI volumes.

`polynomial_bias_field_dwi`(data, gtab, *[, ...])	DWI bias field correction via multi-resolution Legendre polynomial regression.
`bias_field_correction`(data, gtab, *[, mask, ...])	Top-level DWI bias field correction via regression.

Module: `denoise.gibbs`¶

gibbs_removal(vol, *[, slice_axis, ...])

Suppresses Gibbs ringing artefacts of images volumes.

Module: `denoise.localpca`¶

`dimensionality_problem_message`(arr, ...)	Message about the number of samples being smaller than one less the dimensionality of the data to be denoised.
`create_patch_radius_arr`(arr, pr)	Create the patch radius array from the data to be denoised and the patch radius.
`compute_patch_size`(patch_radius)	Compute patch size from the patch radius.
`compute_num_samples`(patch_size)	Compute the number of samples as the dot product of the elements.
`compute_suggested_patch_radius`(arr, patch_size)	Compute the suggested patch radius.
`genpca`(arr, *[, sigma, mask, patch_radius, ...])	General function to perform PCA-based denoising of diffusion datasets.
`localpca`(arr, *[, sigma, mask, ...])	Performs local PCA denoising.
`mppca`(arr, *[, mask, patch_radius, ...])	Performs PCA-based denoising using the Marcenko-Pastur distribution.

Module: `denoise.nlmeans`¶

nlmeans(arr, sigma, *[, mask, patch_radius, ...])

Non-local means denoising for 3D and 4D images with selectable algorithms.

Module: `denoise.noise_estimate`¶

`piesno`(data, N, *[, alpha, step, itermax, ...])	Probabilistic Identification and Estimation of Noise (PIESNO).
`estimate_sigma`(arr, *[, ...])	Standard deviation estimation from local patches

Module: `denoise.patch2self`¶

`vol_denoise`(data_dict, b0_idx, dwi_idx, ...)	Denoise a single 3D volume using train and test phase.
`patch2self`(data, bvals, *[, patch_radius, ...])	Patch2Self Denoiser.

adaptive_soft_matching¶

dipy.denoise.adaptive_soft_matching.adaptive_soft_matching(ima, fimau, fimao, sigma)[source]¶

Adaptive Soft Coefficient Matching

Combines two filtered 3D-images at different resolutions and the original image. Returns the resulting combined image.

Parameters:

imandarray: Original (unfiltered) image
fimau3D double array,: filtered image with optimized non-local means using a small block (suggested:3x3), which corresponds to a “high resolution” filter.
fimao3D double array,: filtered image with optimized non-local means using a small block (suggested:5x5), which corresponds to a “low resolution” filter.
sigmathe estimated standard deviation of the Gaussian random variables: that explain the rician noise. Note: In [1] the rician noise was simulated as sqrt((f+x)^2 + (y)^2) where f is the pixel value and x and y are independent realizations of a random variable with Normal distribution, with mean=0 and standard deviation=h

Returns:

fima3D double array: output denoised array which is of the same shape as that of the input

References

polynomial_bias_field_dwi¶

dipy.denoise.bias_correction.polynomial_bias_field_dwi(data, gtab, *, mask=None, order=3, pyramid_levels=(4, 2, 1), n_iter=4, lambda_reg=0.001, robust=True, gradient_weighting=True, zero_background=False)[source]¶

DWI bias field correction via multi-resolution Legendre polynomial regression.

Estimates the bias field from the mean b0 volume in log space using coarse-to-fine Legendre polynomial regression, then applies the estimated field to all DWI volumes.

Parameters:

datandarray: 4D DWI data (X, Y, Z, N).
gtabGradientTable: Gradient table.
maskndarray, optional: 3D binary brain mask. Auto-computed via median_otsu if None.
orderint, optional: Maximum Legendre polynomial order (terms where i+j+k <= order).
pyramid_levelstuple of int, optional: Downsampling factors for coarse-to-fine pyramid (descending order).
n_iterint, optional: Reweighting iterations per pyramid level.
lambda_regfloat, optional: Ridge regularization strength.
robustbool, optional: Apply Tukey biweight robust reweighting.
gradient_weightingbool, optional: Apply gradient-based edge suppression.
zero_backgroundbool, optional: If True, set the bias field to 1.0 (no correction) outside the brain mask. If False, the raw extrapolated field values are preserved in the returned bias_field array. Has no effect on the corrected DWI data (background voxels are always zeroed by the brain mask).

Returns:

correctedndarray: Bias-corrected 4D DWI data, same dtype as input.
bias_fieldndarray: Estimated 3D multiplicative bias field.

bias_field_correction¶

dipy.denoise.bias_correction.bias_field_correction(data, gtab, *, mask=None, method='bspline', order=3, n_control_points=(8, 8, 8), pyramid_levels=(4, 2, 1), n_iter=4, lambda_reg=0.001, robust=True, gradient_weighting=True, return_bias_field=False, zero_background=False)[source]¶

Top-level DWI bias field correction via regression.

Estimates a smooth multiplicative bias field from the mean b0 volume using polynomial or B-spline regression in log space, then applies the correction uniformly to all DWI volumes.

Parameters:

datandarray

4D DWI data (X, Y, Z, N).

gtabGradientTable

Gradient table.

maskndarray, optional

3D binary brain mask. If None, computed via median_otsu.

methodstr, optional

Bias correction method:

"poly": Legendre polynomial regression — fast, low-parameter.
"bspline": Cubic B-spline regression — more flexible.
"auto": Run both methods and return the one with lower Coefficient of Variation within the brain mask. The chosen method is logged at INFO level.

orderint, optional

Maximum Legendre polynomial degree (used only for method=”poly”).

n_control_pointstuple of int, optional

Control grid dimensions at finest level (used only for method=”bspline”).

pyramid_levelstuple of int, optional

Downsampling factors for coarse-to-fine pyramid (descending order).

n_iterint, optional

Reweighting iterations per pyramid level.

lambda_regfloat, optional

Ridge regularization strength.

robustbool, optional

Apply Tukey biweight robust reweighting at each level.

gradient_weightingbool, optional

Weight regression by edge-suppression map derived from the image gradient.

return_bias_fieldbool, optional

If True, return the bias field alongside the corrected data.

zero_backgroundbool, optional

If True, set the bias field to 1.0 (no correction) outside the brain mask. If False, the raw extrapolated field values are preserved in the returned bias_field array. Has no effect on the corrected DWI data (background voxels are always zeroed by the brain mask).

Returns:

correctedndarray: Bias-corrected DWI, same dtype as input.
bias_fieldndarray: 3D multiplicative bias field (only returned if return_bias_field=True).

gibbs_removal¶

dipy.denoise.gibbs.gibbs_removal(vol, *, slice_axis=2, n_points=3, inplace=True, num_processes=1)[source]¶

Suppresses Gibbs ringing artefacts of images volumes.

See [2] and [3] for further details about the method.

Parameters:

volndarray ([X, Y]), ([X, Y, Z]) or ([X, Y, Z, g]): Matrix containing one volume (3D) or multiple (4D) volumes of images.
slice_axisint (0, 1, or 2): Data axis corresponding to the number of acquired slices.
n_pointsint, optional: Number of neighbour points to access local TV (see note).
inplacebool, optional: If True, the input data is replaced with results. Otherwise, returns a new array.
num_processesint or None, optional: Split the calculation to a pool of children processes. This only applies to 3D or 4D data arrays. Default is 1. If < 0 the maximal number of cores minus num_processes + 1 is used (enter -1 to use as many cores as possible). 0 raises an error.

Returns:

volndarray ([X, Y]), ([X, Y, Z]) or ([X, Y, Z, g]): Matrix containing one volume (3D) or multiple (4D) volumes of corrected images.

Notes

For 4D matrix last element should always correspond to the number of diffusion gradient directions.

References

dimensionality_problem_message¶

dipy.denoise.localpca.dimensionality_problem_message(arr, num_samples, spr)[source]¶

Message about the number of samples being smaller than one less the dimensionality of the data to be denoised.

Parameters:

arrndarray: Data to be denoised.
num_samplesint: Number of samples.
sprint: Suggested patch radius.

Returns:

str: Message.

create_patch_radius_arr¶

dipy.denoise.localpca.create_patch_radius_arr(arr, pr)[source]¶

Create the patch radius array from the data to be denoised and the patch radius.

Parameters:

arrndarray: Data to be denoised.
print or ndarray: Patch radius.

Returns:

patch_radiusndarray: Number of samples.

compute_patch_size¶

dipy.denoise.localpca.compute_patch_size(patch_radius)[source]¶

Compute patch size from the patch radius.

it is twice the radius plus one.

Parameters:

patch_radiusndarray: Patch radius.

Returns:

int: Number of samples.

compute_num_samples¶

dipy.denoise.localpca.compute_num_samples(patch_size)[source]¶

Compute the number of samples as the dot product of the elements.

Parameters:

patch_sizendarray: Patch size.

Returns:

int: Number of samples.

compute_suggested_patch_radius¶

dipy.denoise.localpca.compute_suggested_patch_radius(arr, patch_size)[source]¶

Compute the suggested patch radius.

Parameters:

arrndarray: Data to be denoised.
patch_sizendarray: Patch size.

Returns:

int: Suggested patch radius.

genpca¶

dipy.denoise.localpca.genpca(arr, *, sigma=None, mask=None, patch_radius=2, pca_method='eig', tau_factor=None, return_sigma=False, out_dtype=None, suppress_warning=False)[source]¶

General function to perform PCA-based denoising of diffusion datasets.

Parameters:

arr4D array

Array of data to be denoised. The dimensions are (X, Y, Z, N), where N are the diffusion gradient directions. The first 3 dimension must have size >= 2 * patch_radius + 1 or size = 1.

sigmafloat or 3D array, optional

Standard deviation of the noise estimated from the data. If no sigma is given, this will be estimated based on random matrix theory [4], [5].

mask3D boolean array, optional

A mask with voxels that are true inside the brain and false outside of it. The function denoises within the true part and returns zeros outside of those voxels.

patch_radiusint or 1D array, optional

The radius of the local patch to be taken around each voxel (in voxels). E.g. patch_radius=2 gives 5x5x5 patches.

pca_method‘eig’ or ‘svd’, optional

Use either eigenvalue decomposition (eig) or singular value decomposition (svd) for principal component analysis. The default method is ‘eig’ which is faster. However, occasionally ‘svd’ might be more accurate.

tau_factorfloat, optional

Thresholding of PCA eigenvalues is done by nulling out eigenvalues that are smaller than:

\[\tau = (\tau_{factor} \sigma)^2\]

\(\tau_{factor}\) can be set to a predefined values (e.g. \(\tau_{factor} = 2.3\) [6]), or automatically calculated using random matrix theory (in case that \(\tau_{factor}\) is set to None).

return_sigmabool, optional

If true, the Standard deviation of the noise will be returned.

out_dtypestr or dtype, optional

The dtype for the output array. Default: output has the same dtype as the input.

suppress_warningbool, optional

If true, suppress warning caused by patch_size < arr.shape[-1].

Returns:

denoised_arr4D array: This is the denoised array of the same size as that of the input data, clipped to non-negative values.

References

localpca¶

dipy.denoise.localpca.localpca(arr, *, sigma=None, mask=None, patch_radius=2, gtab=None, patch_radius_sigma=1, pca_method='eig', tau_factor=2.3, return_sigma=False, correct_bias=True, out_dtype=None, suppress_warning=False)[source]¶

Performs local PCA denoising.

The method follows the algorithm in Manjón et al.[6].

Parameters:

arr4D array

Array of data to be denoised. The dimensions are (X, Y, Z, N), where N are the diffusion gradient directions.

sigmafloat or 3D array, optional

Standard deviation of the noise estimated from the data. If not given, calculate using method in Manjón et al.[6].

mask3D boolean array, optional

A mask with voxels that are true inside the brain and false outside of it. The function denoises within the true part and returns zeros outside of those voxels.

patch_radiusint or 1D array, optional

The radius of the local patch to be taken around each voxel (in voxels). E.g. patch_radius=2 gives 5x5x5 patches.

gtab: gradient table object (optional if sigma is provided)

gradient information for the data gives us the bvals and bvecs of diffusion data, which is needed to calculate noise level if sigma is not provided.

patch_radius_sigmaint, optional

The radius of the local patch to be taken around each voxel (in voxels) for estimating sigma. E.g. patch_radius_sigma=2 gives 5x5x5 patches.

pca_method‘eig’ or ‘svd’, optional

tau_factorfloat, optional

Thresholding of PCA eigenvalues is done by nulling out eigenvalues that are smaller than:

\[\tau = (\tau_{factor} \sigma)^2\]

tau_{factor} can be change to adjust the relationship between the noise standard deviation and the threshold tau. If tau_{factor} is set to None, it will be automatically calculated using the Marcenko-Pastur distribution [5]. Default: 2.3 according to Manjón et al.[6].

return_sigmabool, optional

If true, a noise standard deviation estimate based on the Marcenko-Pastur distribution is returned [5].

correct_biasbool, optional

Whether to correct for bias due to Rician noise. This is an implementation of equation 8 in [6].

out_dtypestr or dtype, optional

The dtype for the output array. Default: output has the same dtype as the input.

suppress_warningbool, optional

If true, suppress warning caused by patch_size < arr.shape[-1].

Returns:

denoised_arr4D array: This is the denoised array of the same size as that of the input data, clipped to non-negative values

References

mppca¶

dipy.denoise.localpca.mppca(arr, *, mask=None, patch_radius=2, pca_method='eig', return_sigma=False, out_dtype=None, suppress_warning=False)[source]¶

Performs PCA-based denoising using the Marcenko-Pastur distribution.

See [5] for further details about the method.

Parameters:

arr4D array: Array of data to be denoised. The dimensions are (X, Y, Z, N), where N are the diffusion gradient directions.
mask3D boolean array, optional: A mask with voxels that are true inside the brain and false outside of it. The function denoises within the true part and returns zeros outside of those voxels.
patch_radiusint or 1D array, optional: The radius of the local patch to be taken around each voxel (in voxels). E.g. patch_radius=2 gives 5x5x5 patches.
pca_method‘eig’ or ‘svd’, optional: Use either eigenvalue decomposition (eig) or singular value decomposition (svd) for principal component analysis. The default method is ‘eig’ which is faster. However, occasionally ‘svd’ might be more accurate.
return_sigmabool, optional: If true, a noise standard deviation estimate based on the Marcenko-Pastur distribution is returned [4].
out_dtypestr or dtype, optional: The dtype for the output array. Default: output has the same dtype as the input.
suppress_warningbool, optional: If true, suppress warning caused by patch_size < arr.shape[-1].

Returns:

denoised_arr4D array: This is the denoised array of the same size as that of the input data, clipped to non-negative values
sigma3D array (when return_sigma=True): Estimate of the spatial varying standard deviation of the noise

References

nlmeans¶

dipy.denoise.nlmeans.nlmeans(arr, sigma, *, mask=None, patch_radius=1, block_radius=None, rician=True, num_threads=None, method='blockwise')[source]¶

Non-local means denoising for 3D and 4D images with selectable algorithms.

This implementation provides two different algorithms for non-local means denoising: the classic approach and an improved blockwise algorithm. The blockwise method offers better coordinate handling, memory efficiency, and performance through advanced parallelization and statistical pre-filtering.

See [7] for further details about the classic method. See [8] and [1] for further details about the blockwise method.

Parameters:

arr3D or 4D ndarray

The array to be denoised. For 3D arrays, shape should be (height, width, depth). For 4D arrays, shape should be (height, width, depth, volumes) where the last dimension represents different volumes (e.g., DWI directions).

sigmafloat, 1D ndarray, or 3D ndarray

Standard deviation of the noise estimated from the data. For 3D arrays, this should be a scalar. For 4D arrays, this can be either a scalar (same noise level for all volumes), a 1D array with length equal to the number of volumes, or a 3D array with shape arr.shape[:3].

mask3D ndarray, optional

Binary mask indicating which voxels to process. Should have shape (height, width, depth). Voxels with mask value 0 are set to 0 in output. If None, all voxels are processed.

patch_radiusint, optional

Radius for similarity search neighborhoods. Patches of size (2*patch_radius + 1)³ around each voxel are compared to find similar structures.

block_radiusint, optional

Radius for weighted averaging blocks. Each block has size (2*block_radius + 1)³. Larger blocks provide more smoothing but increase computational cost. If None, defaults are:

method=’classic’: 5 (11*11*11 blocks)
method=’blockwise’: 2 (5*5*5 blocks)

ricianbool, optional

If True, assumes Rician noise model (appropriate for magnitude MRI data). If False, assumes Gaussian noise model.

num_threadsint, optional

Number of OpenMP threads to use for parallel processing. If None, uses all available CPU threads. Set to 1 to disable parallel processing.

methodstr, optional

Algorithm method to use:

‘blockwise’: Improved algorithm with better coordinate handling, memory efficiency, and statistical pre-filtering
‘classic’: Original algorithm with traditional implementation

Added in version 1.12.0.

Returns:

denoised_arrndarray: The denoised array with the same shape and dtype as the input arr. Values are clipped to non-negative range for Rician noise model.

Notes

Due to coordinate bug fixes in the blockwise method, equivalent denoising quality may require different parameters between methods: - Classic patch_radius=3 ≈ Blockwise patch_radius=2 - Block_radius can be smaller for blockwise due to efficiency improvements

For 4D inputs with method='blockwise', a 3D sigma map is accepted and passed through for blockwise processing.

References

Examples

>>> import numpy as np
>>> from dipy.denoise.nlmeans import nlmeans
>>> # Create synthetic noisy data
>>> clean_data = np.random.rand(50, 50, 50) * 100
>>> noisy_data = clean_data + np.random.randn(50, 50, 50) * 10
>>> # Denoise a 3D image with default blockwise method
>>> denoised_data = nlmeans(noisy_data, sigma=10.0)
>>> # Use classic method for compatibility:
>>> denoised_classic = nlmeans(noisy_data, sigma=10.0, method='classic')
>>> # Denoise 4D DWI data with different noise levels per volume:
>>> dwi_data = np.random.rand(64, 64, 40, 30) * 1000  # 30 DWI directions
>>> noise_levels = np.linspace(50, 100, 30)  # Varying noise
>>> denoised_dwi = nlmeans(dwi_data, sigma=noise_levels)
>>> # Denoise 4D DWI data with a 3D sigma map (e.g., from PIESNO):
>>> sigma_map = np.ones((64, 64, 40)) * 30  # one value per spatial voxel
>>> denoised_piesno = nlmeans(dwi_data, sigma=sigma_map)

piesno¶

dipy.denoise.noise_estimate.piesno(data, N, *, alpha=0.01, step=100, itermax=100, eps=1e-05, return_mask=False)[source]¶

Probabilistic Identification and Estimation of Noise (PIESNO).

See [9] and [10] for further details about the method.

Parameters:

datandarray: The magnitude signals to analyse. The last dimension must contain the same realisation of the volume, such as dMRI or fMRI data.
Nint: The number of phase array coils of the MRI scanner. If your scanner does a SENSE reconstruction, ALWAYS use N=1, as the noise profile is always Rician. If your scanner does a GRAPPA reconstruction, set N as the number of phase array coils.
alphafloat: Probabilistic estimation threshold for the gamma function.
stepint: number of initial estimates for sigma to try.
itermaxint: Maximum number of iterations to execute if convergence is not reached.
epsfloat: Tolerance for the convergence criterion. Convergence is reached if two subsequent estimates are smaller than eps.
return_maskbool: If True, return a mask identifying all the pure noise voxel that were found.

Returns:

sigmafloat: The estimated standard deviation of the gaussian noise.
maskndarray, optional: A boolean mask indicating the voxels identified as pure noise.

Notes

This function assumes two things : 1. The data has a noisy, non-masked background and 2. The data is a repetition of the same measurements along the last axis, i.e. dMRI or fMRI data, not structural data like T1/T2.

This function processes the data slice by slice, as originally designed in the paper. Use it to get a slice by slice estimation of the noise, as in spinal cord imaging for example.

References

estimate_sigma¶

dipy.denoise.noise_estimate.estimate_sigma(arr, *, disable_background_masking=False, N=0)[source]¶

Standard deviation estimation from local patches

Parameters:

arr3D or 4D ndarray: The array to be estimated
disable_background_maskingbool, optional: If True, uses all voxels for the estimation, otherwise, only non-zeros voxels are used. Useful if the background is masked by the scanner.
Nint, optional: Number of coils of the receiver array. Use N = 1 in case of a SENSE reconstruction (Philips scanners) or the number of coils for a GRAPPA reconstruction (Siemens and GE). Use 0 to disable the correction factor, as for example if the noise is Gaussian distributed. See [11] for more information.

Returns:

sigmandarray: standard deviation of the noise, one estimation per volume.

Notes

This function is the same as manually taking the standard deviation of the background and gives one value for the whole 3D array. It also includes the coil-dependent correction factor from Koay and Basser[11] (see equation 18 in [11]) with theta = 0. Since this function was introduced in [8] for T1 imaging, it is expected to perform ok on diffusion MRI data, but might oversmooth some regions and leave others un-denoised for spatially varying noise profiles. Consider using piesno() to estimate sigma instead if visual inaccuracies are apparent in the denoised result.

References

vol_denoise¶

dipy.denoise.patch2self.vol_denoise(data_dict, b0_idx, dwi_idx, model, alpha, b0_denoising, verbose, tmp_dir)[source]¶

Denoise a single 3D volume using train and test phase.

Parameters:

data_dictdict

Dictionary containing the following:

data_namestr: The name of the memmap file containing the memmaped data.
data_dtypedtype: The dtype of the data.
data_shapetuple: The shape of the data.
data_b0sndarray: Array of all 3D patches flattened out to be 2D for b0 volumes.
data_dwindarray: Array of all 3D patches flattened out to be 2D for dwi volumes.

b0_idxndarray

The indices of the b0 volumes.

dwi_idxndarray

The indices of the dwi volumes.

modelsklearn.base.RegressorMixin

This is the model that is initialized from the _fit_denoising_model function.

alphafloat

Regularization parameter only for ridge and lasso regression models.

b0_denoisingbool

Skips denoising b0 volumes if set to False.

verbosebool

Show progress of Patch2Self and time taken.

tmp_dirstr

The directory to save the temporary files.

Returns:

denoised_arr.namestr: The name of the memmap file containing the denoised array.
denoised_arr.dtypedtype: The dtype of the denoised array.
denoised_arr.shapetuple: The shape of the denoised array.

patch2self¶

dipy.denoise.patch2self.patch2self(data, bvals, *, patch_radius=(0, 0, 0), model='ols', b0_threshold=50, out_dtype=None, alpha=1.0, verbose=False, b0_denoising=True, clip_negative_vals=False, shift_intensity=True, tmp_dir=None, version=3)[source]¶

Patch2Self Denoiser.

See [12] for further details about the method. See [13] for further details about the new method.

Parameters:

datandarray: The 4D noisy DWI data to be denoised.
bvalsarray of shape (N,): Array of the bvals from the DWI acquisition
patch_radiusint or array of shape (3,), optional: The radius of the local patch to be taken around each voxel (in voxels).
modelstring, or sklearn.base.RegressorMixin, optional: This will determine the algorithm used to solve the set of linear equations underlying this model. If it is a string it needs to be one of the following: {‘ols’, ‘ridge’, ‘lasso’}. Otherwise, it can be an object that inherits from dipy.optimize.SKLearnLinearSolver or an object with a similar interface from Scikit-Learn: sklearn.linear_model.LinearRegression, sklearn.linear_model.Lasso or sklearn.linear_model.Ridge and other objects that inherit from sklearn.base.RegressorMixin.
b0_thresholdint, optional: Threshold for considering volumes as b0.
out_dtypestr or dtype, optional: The dtype for the output array. Default: output has the same dtype as the input.
alphafloat, optional: Regularization parameter only for ridge regression model.
verbosebool, optional: Show progress of Patch2Self and time taken.
b0_denoisingbool, optional: Skips denoising b0 volumes if set to False.
clip_negative_valsbool, optional: Sets negative values after denoising to 0 using np.clip.
shift_intensitybool, optional: Shifts the distribution of intensities per volume to give non-negative values.
tmp_dirstr, optional: The directory to save the temporary files. If None, the temporary files are saved in the system’s default temporary directory.
versionint, optional: Version 1 or 3 of Patch2Self to use.

Returns:

denoised arrayndarray: This is the denoised array of the same size as that of the input data, clipped to non-negative values.

References

`denoise`¶

Module: `denoise.adaptive_soft_matching`¶

Module: `denoise.bias_correction`¶

Module: `denoise.gibbs`¶

Module: `denoise.localpca`¶

Module: `denoise.nlmeans`¶

Module: `denoise.noise_estimate`¶

Module: `denoise.patch2self`¶

adaptive_soft_matching¶

polynomial_bias_field_dwi¶

bias_field_correction¶

gibbs_removal¶

dimensionality_problem_message¶

create_patch_radius_arr¶

compute_patch_size¶

compute_num_samples¶

compute_suggested_patch_radius¶

genpca¶

localpca¶

mppca¶

nlmeans¶

piesno¶

estimate_sigma¶

vol_denoise¶

patch2self¶

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denoise¶

Module: denoise.adaptive_soft_matching¶

Module: denoise.bias_correction¶

Module: denoise.gibbs¶

Module: denoise.localpca¶

Module: denoise.nlmeans¶

Module: denoise.noise_estimate¶

Module: denoise.patch2self¶

adaptive_soft_matching¶

polynomial_bias_field_dwi¶

bias_field_correction¶

gibbs_removal¶

dimensionality_problem_message¶

create_patch_radius_arr¶

compute_patch_size¶

compute_num_samples¶

compute_suggested_patch_radius¶

genpca¶

localpca¶

mppca¶

nlmeans¶

piesno¶

estimate_sigma¶

vol_denoise¶

patch2self¶

`denoise`¶

Module: `denoise.adaptive_soft_matching`¶

Module: `denoise.bias_correction`¶

Module: `denoise.gibbs`¶

Module: `denoise.localpca`¶

Module: `denoise.nlmeans`¶

Module: `denoise.noise_estimate`¶

Module: `denoise.patch2self`¶